Sikkim Manipal University provides scholarships to its students based on their academic performance and other factors. Students with an average PCM percentage of 90 and above can avail of a concession of up to 30% on their course fees.
Government-sponsored students are eligible for a scholarship of up to 75%. Students pursuing MD/MS, MBBS, B.Sc Nursing, and BPT can also receive stipends during the period of their internship. It also offers a concession of 20% on course fees to B.Tech candidates.